PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05216.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 203aa    MW: 22510.5 Da    PI: 10.4022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05216.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.38.9e-142441055
                           AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +k+g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Zmw_sc05216.1.g00050.1.am.mk  2 RKWGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 44
                                  46**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-28158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-26153IPR001471AP2/ERF domain
CDDcd000182.72E-22154No hitNo description
PROSITE profilePS5103219.572152IPR001471AP2/ERF domain
PfamPF008471.1E-7244IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18254IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTAVA AARAYDTAVF YLRGRSARLN FPDQLDGAAV  60
ADRPEDRKEG GGLTAAAIRK KAAEVGARVD ALHSGGGVVH PPALPLSHRR RAKNPDLNRE  120
PTPDTSDDEL EKPEVSCRSL IWPEATPTAT ARSSRVRVKC VALACRETLQ RSEQDRSFFA  180
PVTGPHRCVW RKEEMRLSGS DVP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813567.14e-69ethylene-responsive transcription factor RAP2-9-like
SwissprotO221741e-39ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1E5VTH66e-72A0A1E5VTH6_9POAL; Ethylene-responsive transcription factor ERF008
STRINGPavir.J20437.1.p4e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]