PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc05023.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 399aa    MW: 42316.5 Da    PI: 8.5725
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc05023.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.28.1e-441062593134
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssa 82 
                                   ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s a
  Zmw_sc05023.1.g00050.1.sm.mk 106 PAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGA 186
                                   689*****************************************************************9999999999999 PP

                           TCP  83 snsssg.kaaksaakskksqksaasalnlakesr....................akarararertrekmrikn 134
                                   s++s++ +aa++ ++ +++q++ as+l  +++ +                    a + +r+r+r++++ ++++
  Zmw_sc05023.1.g00050.1.sm.mk 187 SHHSAAsRAATAFHHLQPQQHDVASMLGWNHHYQqqqqllqppppqqqapqdpgAGEFMRKRYREADDLFKDT 259
                                   98888845566666***************99888788999999999999999888888888888888877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-38111254IPR005333Transcription factor, TCP
PROSITE profilePS5136928.349111165IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDHGAAPSSS TSTSTNSSRS ASEQQQQHHH HQHQQAHQQV QHHAFYYAAA AQGGAANAAA  60
AVGMAPFMGS LSIVPAAAAA GEAQAAQQVA PAASSGEEKK QQVVVPAKRP TKDRHTKVEG  120
RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV  180
SLRSGASHHS AASRAATAFH HLQPQQHDVA SMLGWNHHYQ QQQQLLQPPP PQQQAPQDPG  240
AGEFMRKRYR EADDLFKDTA ARQQQQQQPD GADEPEEQKA RALPTAMWAV APNSSAAGGA  300
FWMQPAWAFG GGGPAAAGTV QAPLQFMSTR SGGDFPGGHM ADNSIGMLAA LNTSVQHQHQ  360
HQQDEQPQQQ QPKSTMAQQQ RHRAGANGGN AGHGAASPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978832.11e-117transcription factor PCF3
SwissprotQ53PH21e-95PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0A9G9I11e-123A0A0A9G9I1_ARUDO; Uncharacterized protein
STRINGGRMZM2G003944_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652