PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04955.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 324aa    MW: 33973.8 Da    PI: 6.2313
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04955.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.31e-274109199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvy 74 
                                   +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a+   ++   ++++sl+yeA+ r+ +Pvy
  Zmw_sc04955.1.g00020.1.sm.mk   4 SCNGCRVLRKGCSDGCTIRPCLqwikaPEAQANATVFLAKFYGRAGLLNLLAAAaaGPDGPAAVFRSLLYEACGRIVNPVY 84 
                                   6**************************************************99854567789******************* PP

                        DUF260  75 Gavgvilklqqqleqlkaelallke 99 
                                   G+vg+++++q++ +q+++e++l +e
  Zmw_sc04955.1.g00020.1.sm.mk  85 GSVGLLWSGQWHACQAAVEAVLKGE 109
                                   ******************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.2653111IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-224105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKA PEAQANATVF LAKFYGRAGL LNLLAAAAAG  60
PDGPAAVFRS LLYEACGRIV NPVYGSVGLL WSGQWHACQA AVEAVLKGEP VVRVAANSAS  120
SAEHPETEAT PPLSARAACD IRHVGAKDRD ASAAAAAAAA VADLLRVSRA GRTKFKRASS  180
SSTTSKTKPA VVGASKPDNS RASPRPSAQV RDPVVVLGSG DELDDARALS HREESAGSHQ  240
HLDDDCDVAA AQDGSSEDTE AEAGSHVSQA EEHHSHVHAS SQDEDDEEVD LELTLGLEPV  300
AVRHEARSST WNLRRLSAVS MLMG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.15e-99LOB domain-containing protein 42-like
TrEMBLI1IL921e-97I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.12e-98(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127