PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04894.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 297aa    MW: 33151.9 Da    PI: 10.2582
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04894.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.8e-112401255
                           AP2 12 rgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  +grW A+I++      r +r++lg+f  ++eAa+a++ a+++++g
  Zmw_sc04894.1.g00010.1.sm.mk  2 NGRWGAQIYE------RhQRVWLGTFTGEDEAARAYDVAAQRFRG 40
                                  69*******9......44**********99*************98 PP

2B394.66.6e-30117216192
                                   EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                                   f+k  tpsdv+k++rlv+pk++ae+h          ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++g
  Zmw_sc04894.1.g00010.1.sm.mk 117 FDKMVTPSDVGKLNRLVIPKQHAEKHfplrlpasTVVECKGVLLCFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKG 197
                                   8999*************************9998866666999*************************************** PP

                                   --TT-EEEEEE-SSSEE.. CS
                            B3  74 LkegDfvvFkldgrsefel 92 
                                   L++gD v F+++   e++l
  Zmw_sc04894.1.g00010.1.sm.mk 198 LRAGDAVGFYRSAAGEQQL 216
                                   **********776555545 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.635148IPR001471AP2/ERF domain
SMARTSM003801.0E-17154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-16148IPR001471AP2/ERF domain
CDDcd000182.74E-19148No hitNo description
SuperFamilySSF541713.01E-13248IPR016177DNA-binding domain
PfamPF008472.8E-6240IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.1E-41109232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-29114221IPR015300DNA-binding pseudobarrel domain
CDDcd100178.35E-29115209No hitNo description
PfamPF023621.0E-26117218IPR003340B3 DNA binding domain
SMARTSM010194.0E-22117223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578117222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
PNGRWGAQIY ERHQRVWLGT FTGEDEAARA YDVAAQRFRG RDAVTNFRPL GDSSDPDAAA  60
ELRFLASRTK AEVVDMLRKH TYLDELAQNR RAFAAVCPSP PPLPSKNPSA SAREHLFDKM  120
VTPSDVGKLN RLVIPKQHAE KHFPLRLPAS TVVECKGVLL CFEDAAGKVW RFRYSYWNSS  180
QSYVLTKGWS RFVKEKGLRA GDAVGFYRSA AGEQQLYIDC KVRSTTRTSS STAGPVKAVR  240
LFGVDLLTKP RPASAAPPVQ EEMTVAMKNK RPGEFIITSS TPPHMFFKKQ CVDFAPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5311423511127DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.11e-158AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H41e-137Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A2T7EAR21e-158A0A2T7EAR2_9POAL; Uncharacterized protein
STRINGPavir.J13012.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]