PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04709.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 296aa    MW: 31428.6 Da    PI: 11.0223
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04709.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.62.7e-35532128131
                           TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssas 83 
                                    +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++     +    sss+s
  Zmw_sc04709.1.g00100.1.sm.mk  53 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssapS---TSSSSS 130
                                   589*******************************************************99999444332221...222222 PP

                           TCP  84 nsssg..........................kaaksaa.kskksqksaasalnlakesr.......akarararertrekm 130
                                   + +++                          +a +++a   ++ +++aa+   +a+ ++       + a  ra+e+tr+++
  Zmw_sc04709.1.g00100.1.sm.mk 131 HYQQSvlgkrpreegdatvaaasafwaalpsAAPRTEAwGFSPLEAQAATYVPMAQAHHlnllaalSGAARRAEEETRQEH 211
                                   112224557777778888888888888888733344443555555555555555555556677766677777778777776 PP

                           TCP 131 r 131
                                    
  Zmw_sc04709.1.g00100.1.sm.mk 212 Y 212
                                   5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-3152151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.00953107IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPTRDVPTAA AAMFHVYQPA QIPSTAAPAT AATDGTVKVP ASTQGKKKAA QGGKDRHSKV  60
NGRGRRVRMP IVCAARVFQL TRELGLKSDG QTIEWLLRQA EPSILAATGS GTTPAVFVSS  120
SAPSTSSSSS HYQQSVLGKR PREEGDATVA AASAFWAALP SAAPRTEAWG FSPLEAQAAT  180
YVPMAQAHHL NLLAALSGAA RRAEEETRQE HYYYNRASVK GQQSVQSCWP MATQAADEQI  240
TAMITPGNPR TIPFRPRRSL FLAFPRNRFE GKGNGGQKAA APAARTTAVL PPAARL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452500.13e-82transcription factor TCP7
SwissprotQ9FMX23e-38TCP7_ARATH; Transcription factor TCP7
TrEMBLC5XY736e-81C5XY73_SORBI; Uncharacterized protein
STRINGSb04g026970.11e-81(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100