PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04622.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 538aa    MW: 58736.8 Da    PI: 8.5381
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04622.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.52.7e-322003401128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+el+ e+L+ k++ +       +   +    +i+   +i++++P++Lp  v ++    +fF++ +k+y+t
  Zmw_sc04622.1.g00040.1.am.mk 200 LPAGVKFDPTDQELL-EHLEGKARPDVcklhplI---DefipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTT 275
                                   799************.99****999984444332...143333665557**********.555555677************ PP

                           NAM  71 gkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk+r+++      + +W++tgk+++v+s +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zmw_sc04622.1.g00040.1.am.mk 276 GTRKRRKVHtgdqggETRWHKTGKTRPVFS-NGRLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 340
                                   ******855345544667************.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-37190359IPR003441NAC domain
PROSITE profilePS5100533.1200359IPR003441NAC domain
PfamPF023652.3E-14201340IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MDVGVSDLHR CARSNVLSVV GLGAEDRSGA SPGFRLTRVR SVPPSLGAIF WAATQSWLEF  60
YSLYQPDSEG NRHRSTAPSC SREHGGSIDR VVCLACVAYR SFLRGSAASL AFAPYGGEEE  120
SVARSRGQAE AFLLPSDPLI VEEEDKVENN LATVAAIAAA KKQEQATSHV NLIRTCPSCG  180
HGAQYEQMQA AATIQDLPGL PAGVKFDPTD QELLEHLEGK ARPDVCKLHP LIDEFIPTIE  240
GENGICYTHP ERLPGVGKDG LIRHFFHRPS KAYTTGTRKR RKVHTGDQGG ETRWHKTGKT  300
RPVFSNGRLK GYKKILVLYT NYGKQRKPEK TNWVMHQYHL GPDEEEKDGE LVVSKVFYQT  360
QPRQCGGGGS MTTAKDAAPL PAATDHHQHD GANSMLKAPG IVDFYSPAEL SSYNQAAPNS  420
RAAASAHLIP NFEVHRAGAA GFVFGRHTLL VGGHKPAVGG ANPYTALDRR LAGSGRRPSA  480
ALHTGSRFIG RLLALNLSQV NSEFDQGVHR NQNTDEQESG TCNQHKRWNS DWEQSLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969491.11e-174NAC domain-containing protein 73
TrEMBLK3XK781e-173K3XK78_SETIT; Uncharacterized protein
STRINGSi002301m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786