PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04526.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 274aa    MW: 28583.7 Da    PI: 7.866
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04526.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP88.81.2e-27110715126
                           TCP  15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaks 93 
                                   +g RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a  ai +l+ +  ++a ++   +++ +++++      + ++
  Zmw_sc04526.1.g00010.1.am.mk   1 KGIRDRRVRLSVPTAIQFYDLQDRLGYDQPSKAIEWLINAAAGAIEKLPAL-DPAAFAVvpAPNEAKVNQQ------RGSK 74 
                                   699************************************************.4444344664444455544......2223 PP

                           TCP  94 aakskksqksaasalnlak.esrakarararert 126
                                   +  s+ s++s+ s l+l++ +sr  + +r re t
  Zmw_sc04526.1.g00010.1.am.mk  75 SGGSSTSETSKGSELSLSRsDSR-ASASRDREVT 107
                                   33445555555556777774444.4444456644 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.545148IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-251104IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
KGIRDRRVRL SVPTAIQFYD LQDRLGYDQP SKAIEWLINA AAGAIEKLPA LDPAAFAVVP  60
APNEAKVNQQ RGSKSGGSST SETSKGSELS LSRSDSRASA SRDREVTVAS TSAQAASFTE  120
LLTGVAEHRQ AWPSPPNVSA AAADCVGIAH PEKGANGMST HAFSGLAGVK FGNAPPFGMV  180
PAQPFNFSAS AEMPHFSLAQ DALAAASASA PAGDYNLNFS MSSGHQQQQL QPFLFGHAAA  240
AAAHPSSENH LSASAALQLW DGFRHSGMKE KSKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-22149755Putative transcription factor PCF6
5zkt_B2e-22149755Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644443.11e-133transcription factor PCF6
SwissprotQ10CE84e-81PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A1D6GG321e-132A0A1D6GG32_MAIZE; Transcription factor TCP2
STRINGGRMZM2G089361_P011e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271