PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04510.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 478aa    MW: 51376.7 Da    PI: 10.153
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04510.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY87.43.9e-273004785134
                         YABBY   5 ssseqvCyvqCnfCntilavs.............vPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslke 69 
                                   s +eq+Cyv+Cn C+tilavs             vP +slfk+vtvrCGhCt+llsvnl+       + +a ++l+  ++ 
  Zmw_sc04510.1.g00120.1.am.mk 300 SPTEQLCYVHCNCCDTILAVSdhrcgaerappvgVPCSSLFKTVTVRCGHCTNLLSVNLRGLLlppAAPPAANQLNFGVQS 380
                                   578****************8777777777777779*************************998676778888988887777 PP

                         YABBY  70 e.....................lleelkveeenlksnvekeesastsvssekl.....senedeevp..rvppvir..... 117
                                   +                     l+e+   + ++++ n  ++++as+  ++++      + +++ e+p   vp v+r     
  Zmw_sc04510.1.g00120.1.am.mk 381 SllsptsphglldelalqapslLMEQASANLSSITGNSYSSSCASNVPAMSMQpaaakPVQHEPELPakSVPSVNRrkdld 461
                                   78889999******9999998766777777777777777777777666655447776644444444311345577644444 PP

                         YABBY 118 PPekrqrvPsaynrfik 134
                                    PekrqrvPsaynrfik
  Zmw_sc04510.1.g00120.1.am.mk 462 SPEKRQRVPSAYNRFIK 478
                                   7***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.3E-29301478IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
LSRHTVPFSI ARLKLSGPAD RSIGLSAGRL GRACVVKLTG IRTGLRTHGL RATNRSVRSV  60
DLRARFHRAR ENRARPGSGF LSRERKTWPH AGAVKSIARS DAPCHTCPLA RRHSASNARA  120
STLRTYSYEV EYERTATTLA IELLRRKSPD RSGRETAGIA PQLSGARGCE TPEPHHSVPL  180
LLSQTVSRCR PLQRAESTGG EEASAWPPAA FVVQSEPRCL PLPIPASLDC FLRLVDPALT  240
LPAFPSLLSA RSTCIAFSDQ RQRRGARCVG AATDIHLAEI MMSSSSSSTA AFPLDHLAPS  300
PTEQLCYVHC NCCDTILAVS DHRCGAERAP PVGVPCSSLF KTVTVRCGHC TNLLSVNLRG  360
LLLPPAAPPA ANQLNFGVQS SLLSPTSPHG LLDELALQAP SLLMEQASAN LSSITGNSYS  420
SSCASNVPAM SMQPAAAKPV QHEPELPAKS VPSVNRRKDL DSPEKRQRVP SAYNRFIK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121