PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04405.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 151aa    MW: 16482.4 Da    PI: 7.4642
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04405.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP45.52.1e-145344978
                                    EEETTT--SS--S-STTTT-------S--- CS
                             SBP 49 fhelsefDeekrsCrrrLakhnerrrkkqa 78
                                    fh+lsefD++krsCrrrL++hn+rrrk+q+
  Zmw_sc04405.1.g00070.1.am.mkhc  5 FHALSEFDQKKRSCRRRLSDHNARRRKQQP 34
                                    ***************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.4132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.75E-11437IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.100.001519IPR004333Transcription factor, SBP-box
PfamPF031101.2E-7532IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MLCWFHALSE FDQKKRSCRR RLSDHNARRR KQQPDAFAFA SARLPTSLFG PDTSVTTSKF  60
DGAPDLQRAL SLLSAGSCGF PDPVQQASCL IQFSGTSENS GDLHLSHGGS AALVSCADEQ  120
HIVPQPQLVR FTMDASSNGY DSTFFGLNQI N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11330KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688371.15e-56PREDICTED: squamosa promoter-binding-like protein 4 isoform X2
RefseqXP_025805124.12e-55squamosa promoter-binding-like protein 4
SwissprotQ653Z54e-18SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBLA0A2T7F2J94e-55A0A2T7F2J9_9POAL; Uncharacterized protein
TrEMBLA0A3L6QEF94e-55A0A3L6QEF9_PANMI; Squamosa promoter-binding-like protein 4
STRINGPavir.Ab00499.1.p6e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952