PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04405.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 423aa    MW: 45197.1 Da    PI: 7.2257
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04405.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16251302458
                                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                                     +kr rr+++NRe+ArrsR+RK+a +  Le+ v++L++eN +L k   +l++  ++
  Zmw_sc04405.1.g00040.1.sm.mkhc 251 VKRMRRMESNRESARRSRKRKQAHLTGLETQVDQLQGENASLFK---QLTDANQQ 302
                                     69**************************************9995...55555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-16248312IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.093250302IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-13251303No hitNo description
PfamPF001701.7E-14251299IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-13252302No hitNo description
CDDcd147024.33E-21253303No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAFVLGCWRS IPVHRVLFHP LQPTQTALVA LPLWRSPAVP QHRGKLVDIS QEQARERGQY  60
AFHAGLRCGQ PPSSLLPLLS PPIAEKTFLF FPGSSASSLK ALLHADAART IALQITVKER  120
EVLAVRSTYA QMKKCPSELE LEAFIGGVES DAEQKPGHVA QFGDGVIFQA GGGDLSPFSF  180
ADSVSGKQRK VVLCRLSEVM VLAAASPASA TNLNVKESQT LGGSSGSDSD SDSLFDNEGG  240
LCEQSTNKLN VKRMRRMESN RESARRSRKR KQAHLTGLET QVDQLQGENA SLFKQLTDAN  300
QQFTASVTDN RILKSNVEAL RAKVKLAEDM VARGAVSCGL GHLGLSPALN PPDVLSGLEF  360
PGDDACFTSL SPTEQVLNSP LQSIASLESI DNRVASEVTS CGGGGAGVDV WGWDSHPNGG  420
LSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270RRSRKRK
2264271RRSRKRKQ
3266271SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.11e-133basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-105RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A194YMZ41e-131A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.11e-132(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]