PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04343.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 234aa    MW: 26905.8 Da    PI: 9.8101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04343.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.94.8e-54782121129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrkn 75 
                                   +ppGfrFhPtdeelv++yL+kkv++ +++l +vik+vd+yk+ePwdL++        ++e++e yfFs++dkky+tg+r+n
  Zmw_sc04343.1.g00050.1.am.mk  78 VPPGFRFHPTDEELVDYYLRKKVASGRIDL-NVIKDVDLYKIEPWDLQEkcrlggPGEEEQNEFYFFSHKDKKYPTGTRTN 157
                                   69****************************.99**************95355544223366699***************** PP

                           NAM  76 ratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   rat+ g+Wkatg+dk+++++ +++lvg++ktLv+ykgrap+g+k+dW+mheyrle
  Zmw_sc04343.1.g00050.1.am.mk 158 RATAVGFWKATGRDKPIYTNkQRQLVGMRKTLVYYKGRAPNGHKSDWIMHEYRLE 212
                                   ******************9856777****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-5667230IPR003441NAC domain
PROSITE profilePS5100554.36378231IPR003441NAC domain
PfamPF023654.3E-2879211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSSDGKLLST RYHKRCRMEV ISACVTTAND HACLLRVLLF VRRPLSHAYL QMQLQPAGGS  60
LGSTGMSSTQ AQAHQQLVPP GFRFHPTDEE LVDYYLRKKV ASGRIDLNVI KDVDLYKIEP  120
WDLQEKCRLG GPGEEEQNEF YFFSHKDKKY PTGTRTNRAT AVGFWKATGR DKPIYTNKQR  180
QLVGMRKTLV YYKGRAPNGH KSDWIMHEYR LETNENGPPQ ASHMLLHVFF PFIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-47652112140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964278.11e-107NAC domain-containing protein 105
SwissprotQ9SL418e-80NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0K1TPX31e-107A0A0K1TPX3_PANVG; Secondary wall NAC master switch
STRINGPavir.J26987.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]