PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04296.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 415aa    MW: 45083.3 Da    PI: 10.5376
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04296.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.77e-10255313563
                                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                     kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+     l++e+
  Zmw_sc04296.1.g00050.1.am.mkhc 255 KRAKRILANRQSAARSKERKIKYTSELEKKVQTLQTEATTLSAQLTLLQRDTTGLTAEN 313
                                     9********************************************99998877777665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-15251315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.955253316IPR004827Basic-leucine zipper domain
PfamPF001701.6E-8255309IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-11255309No hitNo description
SuperFamilySSF579596.4E-11255307No hitNo description
CDDcd147031.78E-21256305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVHMSSTERV RHRQAVARTP RPPRSRSADW TNAARLSSQS NDPLAPCLGR VLRFPHLRSP  60
TSSPFLARST PNSHAPAPPR GPRPTDMDRR FPLPAAPAPS GSRGHHRRAH SETFLRFPDA  120
DLLLDPDGDF SFSDLDFPCL SDDSPAVSDP TPQPPPAQPQ QQAAPSQAAA RPPRDVHARS  180
LSLDAAFFEG LALQGGGGGS SSGGGGKGGH KRSGSMDGVS SPFEGESALS SGMPDYAKKA  240
MPAERIAELA LIDPKRAKRI LANRQSAARS KERKIKYTSE LEKKVQTLQT EATTLSAQLT  300
LLQRDTTGLT AENRELKLRL QSMEEQAKLR DALNEALREE VQRLKIAAGQ AANMNGNRFN  360
GRLQQQIPSY FPQQQQMSYI GGYQAQNRNP SHHQSPSNGG QSLSGQSLND SMDFI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269|PubMed:11432846, ECO:0000269|PubMed:12124400, ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315, ECO:0000269|PubMed:17947581, ECO:0000269|PubMed:19820165, ECO:0000269|PubMed:20547563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269|PubMed:15108305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441871.11e-163transcription factor VIP1
RefseqXP_003578876.11e-163transcription factor VIP1
SwissprotQ9MA752e-71VIP1_ARATH; Transcription factor VIP1
TrEMBLA0A0E0BPD21e-163A0A0E0BPD2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J7371e-163A0A0E0J737_ORYNI; Uncharacterized protein
STRINGOGLUM12G04480.21e-164(Oryza glumipatula)
STRINGONIVA12G03450.11e-164(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Publications ? help Back to Top
  1. Wang Y, et al.
    The putative Agrobacterium transcriptional activator-like virulence protein VirD5 may target T-complex to prevent the degradation of coat proteins in the plant cell nucleus.
    New Phytol., 2014. 203(4): p. 1266-81
    [PMID:24865527]
  2. Xu DB, et al.
    A G-protein β subunit, AGB1, negatively regulates the ABA response and drought tolerance by down-regulating AtMPK6-related pathway in Arabidopsis.
    PLoS ONE, 2015. 10(1): p. e0116385
    [PMID:25635681]
  3. Chen J, et al.
    ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters.
    J. Exp. Bot., 2016. 67(5): p. 1327-38
    [PMID:26689855]
  4. Tsugama D,Liu S,Takano T
    VIP1 is very important/interesting protein 1 regulating touch responses of Arabidopsis.
    Plant Signal Behav, 2016. 11(6): p. e1187358
    [PMID:27171129]
  5. Tsugama D,Liu S,Takano T
    The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots.
    Plant Physiol., 2016. 171(2): p. 1355-65
    [PMID:27208231]
  6. Takeo K,Ito T
    Subcellular localization of VIP1 is regulated by phosphorylation and 14-3-3 proteins.
    FEBS Lett., 2017. 591(13): p. 1972-1981
    [PMID:28542772]
  7. Wang L,Lacroix B,Guo J,Citovsky V
    The Agrobacterium VirE2 effector interacts with multiple members of the Arabidopsis VIP1 protein family.
    Mol. Plant Pathol., 2018. 19(5): p. 1172-1183
    [PMID:28802023]