PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04217.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 607aa    MW: 67190.4 Da    PI: 4.5787
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04217.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.35.2e-5291421128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 
                                   lp GfrFhPtdeelv +yLk+k++g+  +++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat+
  Zmw_sc04217.1.g00030.1.sm.mk   9 LPLGFRFHPTDEELVRHYLKRKITGQISSEAEVIPEIDVCKCEPWDLPvKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATE 89 
                                   699************************9999*****************6346667888*********************** PP

                           NAM  80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +gyWkatgkd+ ++sk    k++ +g+kktLvf+kgrapkge+  W+mheyr 
  Zmw_sc04217.1.g00030.1.sm.mk  90 AGYWKATGKDRVIKSKgdkrKQHIIGMKKTLVFHKGRAPKGERMGWIMHEYRT 142
                                   ***************987666666***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-573163IPR003441NAC domain
PROSITE profilePS5100556.4529163IPR003441NAC domain
PfamPF023656.0E-2810141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MTVMELRALP LGFRFHPTDE ELVRHYLKRK ITGQISSEAE VIPEIDVCKC EPWDLPVKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGDKRK QHIIGMKKTL  120
VFHKGRAPKG ERMGWIMHEY RTTEPEFECG EQGGYVLYRL FRKQEEKTER SSPEEMDKSG  180
YSPTPSRSSP DNIEANEEAF TALNKESPES TIHDSPINLP NSVEAHDVSL TRWLADRNDN  240
VAANAVNVSQ MSLSGHINGI AKVDPSAGGL AQLVDSQKQH GDPNHFAANS GSILQHEENA  300
FLTDSQQGHM GFGDNGELPD DQAWWEGLSF DPDEPNPQLS GLYDNTPLLP YDTTDPDVLS  360
MGSGAESIHD LFNNMEDSSG KRDGWSTEPA TKETGITVMP RQSQPSVQQN YLYPHQGTAY  420
RRIRLQESFS LDVESGESAT NVDCKDEASC IEYLDLVVEE STAEKGEASD EDDAESTGIT  480
IRSRRPAPSS SATSSCIVTE YLDEAMEEST AEKGSSDEDD AESTGITIRN ALKAVPEAKS  540
VPRLRKTSEK NDEVSKQEDG VGSPVRAPGK ERGFPSHIVL LVLSVALLLL LCVGGVWMSL  600
IAIQVDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-45816416166NO APICAL MERISTEM PROTEIN
1ut4_B2e-45816416166NO APICAL MERISTEM PROTEIN
1ut7_A2e-45816416166NO APICAL MERISTEM PROTEIN
1ut7_B2e-45816416166NO APICAL MERISTEM PROTEIN
3swm_A2e-45816419169NAC domain-containing protein 19
3swm_B2e-45816419169NAC domain-containing protein 19
3swm_C2e-45816419169NAC domain-containing protein 19
3swm_D2e-45816419169NAC domain-containing protein 19
3swp_A2e-45816419169NAC domain-containing protein 19
3swp_B2e-45816419169NAC domain-containing protein 19
3swp_C2e-45816419169NAC domain-containing protein 19
3swp_D2e-45816419169NAC domain-containing protein 19
4dul_A2e-45816416166NAC domain-containing protein 19
4dul_B2e-45816416166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGPavir.Fb00405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859