PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04187.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 190aa    MW: 20082.8 Da    PI: 8.5032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04187.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.33.6e-0561991255
                                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  R +++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  Zmw_sc04187.1.g00080.1.sm.mk 61 RKEKLGDRIAALQQLVCPF-----GKTDTASVLMEAIGYINFLQ 99
                                  7788999***********9.....8*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.9884998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1059106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.24E-559103No hitNo description
Gene3DG3DSA:4.10.280.106.9E-863103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAVVNAMGGG RHWSAETNAA AACHQKTTAP SSSSSSPAPS PKKPRLESQS SNAVVPSFKV  60
RKEKLGDRIA ALQQLVCPFG KTDTASVLME AIGYINFLQD QVKGSPNGNG EEQEETRLDL  120
RSRGLCLSGG AAGEMIPSDS IKLHGKKINL EKLLAHLQVR REERATASSA PRAVAFCLLD  180
CGDALQIGAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816405.12e-45transcription factor bHLH110
TrEMBLA0A3L6STE67e-50A0A3L6STE6_PANMI; Uncharacterized protein
STRINGPavir.Ea00834.1.p7e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242