PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04169.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 605aa    MW: 66499.1 Da    PI: 5.2485
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04169.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.56e-351612522102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+
  Zmw_sc04169.1.g00070.1.am.mk 161 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFA 232
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+++ll++i+r+k 
  Zmw_sc04169.1.g00070.1.am.mk 233 NEDFIRGHTHLLKNIHRRKP 252
                                   *****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.81E-36156250IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-62157250IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.1E-39157250IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-19161184IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-31161250IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-19199211IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340200224IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-19212224IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
LAPALSFTST SGPGQSPRYK TFAPRLHRRR QTAIDRSLLV FLPAAAAARS SRELAGCVSS  60
ASTATSDSGT DPCGNDEEGD EKCPARIGAS CRDLVRVSVK WFFSGSASGS CAACCFPLLR  120
LPLMLLGKER ESETEAAGME GSQSRSGGGG GGGGSSSPPP FLIKTYEMVE DPATNHVVSW  180
GPGGASFVVW NPPDFSQELL PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH  240
THLLKNIHRR KPVHSHSVQN QVNTLAESER REYEDEIKRL KYEKSLLLAD LQKQDQQRCL  300
TNWQMQSLED RLMQMEQRQK NIVASLCDIL QRNGAVASPL SLQTDHFNFS KKRRVPKIGF  360
FADDDAAVEE ERQASFLQMM GAVPKSPSVF PVQQHPVNAE PFDRMETSLV SLEKFIQRAS  420
DADASPEDMF AIADAPSLAV ALGEVQSAPT ETGINLQSST GQVHSSAGFA ESSCYASSPM  480
LPLADLREDA PRTAKVDINS DTTSTDTSQD EATTETGGSL SQEPAKVNDV FWERFLTETP  540
KFGRAGEADS GRQEDECKSE PAEVKEDEKV AVDCSSLHRY KVVDQITEQM GQLASAEYAV  600
PHHLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D1e-251382501129Heat shock factor protein 1
5d5v_B1e-251382501129Heat shock factor protein 1
5d5u_B1e-251382501129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0PREDICTED: heat stress transcription factor A-4d-like
SwissprotQ93VB51e-166HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778