PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04097.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 288aa    MW: 30205.6 Da    PI: 8.7909
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04097.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260933.5e-2970171197
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C+++Cvl+p++     +++q +++ +++k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+
  Zmw_sc04097.1.g00030.1.sm.mkhc  70 SCNGCRVLRKGCSEECVLRPCLqwietAEAQGHATVFIAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVS 148
                                     6*********************9999777889*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelall 97 
                                     Gavg++ +++++l+q+++e++l+
  Zmw_sc04097.1.g00030.1.sm.mkhc 149 GAVGLLGSGSWHLCQAAVETVLR 171
                                     *****************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.08969175IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-2470169IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGLPHPTPWL VRGPSIRALG LAEPIYSLPG SPWPKLEGLH ARAKLGCCMR GCGSGAWTRV  60
GALGTTTAMS CNGCRVLRKG CSEECVLRPC LQWIETAEAQ GHATVFIAKF FGRAGLMSFL  120
TAVPEPQRPA VFQSLLYEAA GRTINPVSGA VGLLGSGSWH LCQAAVETVL RGGGIHPLPE  180
FDGGLPGATA DGREQFAFTA RRPVGCSTFS AAKRATTTTT TRIAAPHGAV AEPSCDLGLW  240
LSPESPPAPG DRRRRRPGTP SMTSEESVTT TTTTSSGGRG PELLNLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.11e-115LOB domain-containing protein 37
SwissprotQ9FN112e-67LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK3ZWM91e-114K3ZWM9_SETIT; Uncharacterized protein
STRINGSi031011m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]