PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc04040.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 287aa    MW: 32336.9 Da    PI: 6.8423
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc04040.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.7e-3237754129
                           NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk +++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
  Zmw_sc04040.1.g00070.1.am.mk   3 EQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKLIYA-KNCLVGMRKTLVFYRGRAPNGHKSDWIMHEYRLE 77 
                                   578**************************************.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.32197IPR003441NAC domain
SuperFamilySSF1019412.22E-37397IPR003441NAC domain
PfamPF023651.0E-14676IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEEQNEWYFF SHKDKKYPTG TRTNRATTAG FWKATGRDKL IYAKNCLVGM RKTLVFYRGR  60
APNGHKSDWI MHEYRLETSE NATAPEEGWV VCRVFKKRVA TVQRMSESPP CWFDDHSAGF  120
MPALGSPRQL LQHHRNTSAA YVGQHQPLYH CKPELEYHHL LPSQEAFLPQ LPQLESPNSK  180
PPVYIGHGSD SSLPSSEHSR YTPQQQTMAS AAYMAAVDDS ATDWSVLDKF VASQLFSHGD  240
STSKEPSYSS PVPAFPLTES NNQEETQDLV DYASTSVSGG GQADLWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-3149870166NO APICAL MERISTEM PROTEIN
1ut4_B5e-3149870166NO APICAL MERISTEM PROTEIN
1ut7_A5e-3149870166NO APICAL MERISTEM PROTEIN
1ut7_B5e-3149870166NO APICAL MERISTEM PROTEIN
4dul_A5e-3149870166NAC domain-containing protein 19
4dul_B5e-3149870166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825485.11e-147NAC domain-containing protein 7-like
SwissprotQ9FWX21e-77NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2T7F9P21e-147A0A2T7F9P2_9POAL; Uncharacterized protein
STRINGPavir.J39804.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]