PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03992.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 257aa    MW: 27575.6 Da    PI: 6.2198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03992.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.74e-152770855
                           AP2  8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Zmw_sc03992.1.g00090.1.am.mk 27 RRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 70
                                  466.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.7142178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-252778IPR001471AP2/ERF domain
SMARTSM003803.0E-222784IPR001471AP2/ERF domain
CDDcd000181.97E-232777No hitNo description
PfamPF008471.5E-82770IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-172778IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAFSELPKPC PADKPPLPSX XXXXXXRRPW GRYAAEIRDP TTKERHWLGT FDTAQEAALA  60
YDRAALSMKG AQARTNFVYA HAHAAAVYRN NCPPFLAHPS TYVHAPSSTV HQYGGQQHSV  120
GASSSDNGSY HHHCYYSQSP AGSGERSMPL GVDRADGSLL AGGHDLLFSR ADDNSGYLSS  180
VVPASCLRPR SSAAAAEDLQ RFSDADAYGM LGLREDVDDM VAGFWAGAGD AEQLGAEMVA  240
SSSQGSDVYS PFSFLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1528771262ATERF1
3gcc_A3e-1528771262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463362.29e-94ethylene-responsive transcription factor ERF086
SwissprotQ8H3Q12e-75FZP_ORYSJ; Ethylene-responsive transcription factor FZP
TrEMBLA0A1B6QG582e-92A0A1B6QG58_SORBI; Uncharacterized protein
STRINGPavir.Ba00192.1.p5e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM
    Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L).
    BMC Plant Biol., 2003. 3: p. 6
    [PMID:14503923]
  3. Liu HQ, et al.
    [Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)].
    Yi Chuan Xue Bao, 2003. 30(9): p. 811-6
    [PMID:14577371]
  4. Jang S, et al.
    The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice.
    Plant Mol. Biol., 2003. 53(3): p. 357-69
    [PMID:14750524]
  5. Rossini L, et al.
    Candidate genes for barley mutants involved in plant architecture: an in silico approach.
    Theor. Appl. Genet., 2006. 112(6): p. 1073-85
    [PMID:16501940]
  6. Yi G, et al.
    Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.).
    Hereditas, 2005. 142(2005): p. 92-7
    [PMID:16970618]
  7. Duan Y, et al.
    Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice.
    Sci. China, C, Life Sci., 2003. 46(3): p. 328-34
    [PMID:18763148]
  8. Routledge AP, et al.
    Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa).
    Mol. Plant Pathol., 2004. 5(4): p. 253-65
    [PMID:20565594]
  9. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  10. Derbyshire P,Byrne ME
    MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium.
    Plant Physiol., 2013. 161(3): p. 1291-302
    [PMID:23355632]
  11. Poursarebani N, et al.
    The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'.
    Genetics, 2015. 201(1): p. 155-65
    [PMID:26156223]
  12. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  13. Ma X, et al.
    Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.
    Sci Rep, 2016. 6: p. 27425
    [PMID:27251022]