PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03984.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 585aa    MW: 63773 Da    PI: 9.71
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03984.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.7e-501543031128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................kvkaeekewy 59 
                                   lppGfrFhPtdeel+ +yL++++ + ++++  +i++vdiyk++Pw Lp+                      +++ ++kewy
  Zmw_sc03984.1.g00080.1.am.mk 154 LPPGFRFHPTDEELILHYLRNRAGSLPCPE-AIIADVDIYKFDPWALPRehpsfpslasddpcvqdphystMAAYGDKEWY 233
                                   79*************************999.88**************95589**********9999988754444899*** PP

                           NAM  60 fFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   fFs+rd+ky++g r+nra+ sgyWkatg+dk+++s+ +ge+vg+kk Lvfykgr pkg+kt+W+mheyrl
  Zmw_sc03984.1.g00080.1.am.mk 234 FFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSTtTGENVGVKKALVFYKGRPPKGTKTNWIMHEYRL 303
                                   **********************************9988999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-58147336IPR003441NAC domain
PROSITE profilePS5100558.72154336IPR003441NAC domain
PfamPF023658.7E-27155303IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MLLVCVPLQA AAIPLSDGIL SREKKICRGR RKPGPGRSPR KAARWKNRPP TRAGAAEFQR  60
QPSWGPPSPR ISGGITPDPR PTTENGLAPG PRVRRKRVQA AKNPRAYKQA LPSRLCGERR  120
GRSITISAPA RSVDPSRAWE RLVPMVMANP ATSLPPGFRF HPTDEELILH YLRNRAGSLP  180
CPEAIIADVD IYKFDPWALP REHPSFPSLA SDDPCVQDPH YSTMAAYGDK EWYFFSPRDR  240
KYPNGIRPNR AAGSGYWKAT GTDKPIHSTT TGENVGVKKA LVFYKGRPPK GTKTNWIMHE  300
YRLAADANAG HAYHPMKFRN ASMRLDDWVL CRIYNKTSHA SPTPVPSFPD HEQDERCGFD  360
EALYTTSSSA GMNILQGGVA ASAFPMQQAA TGGTQMMPRI QSFSELLNEY SLAQFFDDGG  420
VQDAVPHLDQ QHHAPLLGHP VASHLLVNNG NSNMSGQLLL ANSTASTSAA AAGDGSMVGG  480
KRMRTEESWS HHQAAAVKKP NSSCIGATGV YAETPWNCEE QCSADEDHYP GHIPCSVYLP  540
VSRLGSQAGR RVRSAHAGAT VVALHGVLEL VQHDAAWPPG GRSHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-6415334019172NAC domain-containing protein 19
3swm_B1e-6415334019172NAC domain-containing protein 19
3swm_C1e-6415334019172NAC domain-containing protein 19
3swm_D1e-6415334019172NAC domain-containing protein 19
3swp_A1e-6415334019172NAC domain-containing protein 19
3swp_B1e-6415334019172NAC domain-containing protein 19
3swp_C1e-6415334019172NAC domain-containing protein 19
3swp_D1e-6415334019172NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798103.11e-151NAC domain-containing protein 10-like
TrEMBLA0A3G2LN221e-166A0A3G2LN22_9POAL; NAC transcription factor
STRINGSi036303m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123