PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03978.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 335aa    MW: 36883.3 Da    PI: 10.9817
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03978.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY110.43.2e-3413428324162
                         YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnv......ekeesast 94 
                                   v vP + l+ +vtv+CGhC +l  ++l+  + + ++  +  + l +      + +  ++   +   v       ++ + + 
  Zmw_sc03978.1.g00020.1.am.mk 134 VGVPCKRLMDTVTVKCGHCNNLSYLSLRPPMVQPPSPTD--HPLGPFqverSTLNSTTHPYLFVAVVpsaapsWEKGHCND 212
                                   88********************98889888777666553..3443331112333333333333322200000022333333 PP

                         YABBY  95 svssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                                    ++++ l   s  + e   r p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa 
  Zmw_sc03978.1.g00020.1.am.mk 213 CRRNQPLplpSPTSAEVGRRLPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 283
                                   33333436644444555555666**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.7E-38134284IPR006780YABBY protein
SuperFamilySSF470952.88E-8227285IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-5238285IPR009071High mobility group box domain
CDDcd013904.89E-5245286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQHRRSSLAR PTDRCGWSRA YGAMCAGPGH YCRNRNPTPS SLGTRPATFP LLLPPPSPSS  60
SPDSVRHPAK EACTPEGLTH RSAAVASAAK HQAPSKHGFG GAVRAPVLRA LHLLQHSARG  120
KLLERNRIRS GSRVGVPCKR LMDTVTVKCG HCNNLSYLSL RPPMVQPPSP TDHPLGPFQV  180
ERSTLNSTTH PYLFVAVVPS AAPSWEKGHC NDCRRNQPLP LPSPTSAEVG RRLPFVVKPP  240
EKKHRLPSAY NRFMREEIQR IKAAKPDIPH REAFSMAAKN WAKCDPRCST AVSTASSNNA  300
PQPRVVSTPQ MLLQERAKEQ VVESFDIFKQ IERSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468276.11e-102hypothetical protein SORBIDRAFT_01g042850
SwissprotQ76EJ05e-88YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLC5NS031e-101C5NS03_SORBI; DL related protein
STRINGSb01g042850.11e-101(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657