PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03878.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 289aa    MW: 30545.2 Da    PI: 9.9601
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03878.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.62.9e-17116149134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C ttkTplWR+gp g+k+LCnaCG+++rk +
  Zmw_sc03878.1.g00040.1.sm.mk 116 CSDCSTTKTPLWRSGPCGPKSLCNACGIRQRKAR 149
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-13110151No hitNo description
SMARTSM004014.9E-16110161IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14114149IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.215114146IPR000679Zinc finger, GATA-type
CDDcd002023.16E-14115152No hitNo description
PfamPF003205.0E-15116149IPR000679Zinc finger, GATA-type
PROSITE patternPS003440116141IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSQQQAMLEP RHMIGGSSAA CVFTAPFPTV ESIRDRDDMI EPSSYDPYDM GKLHIGGGPI  60
EAAGAGNWTP PAKMRITRKA SADPGAGGMA VKKPRRRAQA YEDMSSPTNL GVIRVCSDCS  120
TTKTPLWRSG PCGPKSLCNA CGIRQRKARR AMMASAGAVS AESVRAATAT SSDAAAMAVH  180
LKVKKEKRAH VDRSLPFKKR CKVVQDHAAV PVAPVRAADK TAAVVADPAL SGGLVENIEL  240
ISWSRPSPSQ PATTACRSFL PAPALPVQHD EITDAAMLLM TLSCGLVRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.11e-124putative GATA transcription factor 22
SwissprotQ6YW482e-56CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A1E5VZ481e-130A0A1E5VZ48_9POAL; Uncharacterized protein
STRINGPavir.Db01250.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]