PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03861.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 262aa    MW: 28758.7 Da    PI: 6.0795
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03861.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.31.3e-34103189391
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssas 71 
                                    ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai+ l +             s     
  Zmw_sc03861.1.g00090.1.am.mk 103 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDRLGFDKASKTVDWLLTQSKPAIDRLSEPthrgsgsgdaamS----- 178
                                   689*********************************************************9995555443222111..... PP

                           TCP  72 eceaesssssasnsssgkaa 91 
                                          s +++  ++ k+ 
  Zmw_sc03861.1.g00090.1.am.mk 179 -------SPMSA--EIVKET 189
                                   .......11111..111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-33104184IPR005333Transcription factor, TCP
PROSITE profilePS5136934.922104162IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLPYPNPHHF GISQEQPHPN PATAGFPMGP PVVHPDQQHY DHHFFPGHAH YFNSETLEAV  60
LRPPRAASER EVVGVMPVPQ GASRNSVAGA GGQGNARARK RPFRTDRHSK IRTAQGVRDR  120
RMRLSLDVAR DFFALQDRLG FDKASKTVDW LLTQSKPAID RLSEPTHRGS GSGDAAMSSP  180
MSAEIVKETA AAGSGKGSVE KTASRNSSFM DHSCELDRLV SAAPVLGEYY YEFGEMMGSN  240
EGEGDDDGEY DEDGDFLDNM QY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804518.11e-113transcription factor TB1-like
TrEMBLA0A0C4MT201e-142A0A0C4MT20_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Bb02154.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172