PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03738.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 247aa    MW: 27070.9 Da    PI: 9.7831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03738.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.59.7e-181611457128
                           NAM  57 ewyfFskrdkkyatgkrknra..........................tksgyWkatgkdkevlskkgelvglkktLvfy.. 109
                                   + ++F++ +k+y+tg+rk+r+                           ++ +W++tgk+++v++  g++ g+kk+Lv+y  
  Zmw_sc03738.1.g00040.1.sm.mk  16 SRHYFHRPSKAYTTGTRKRRKiqpptaatssssspaaqhqqqqqqqkRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtn 95 
                                   669*****************889******************99988755789************.9999**********55 PP

                           NAM 110 kgrapkgektdWvmheyrl 128
                                    g+++k++kt+Wvmh+y+l
  Zmw_sc03738.1.g00040.1.sm.mk  96 FGKHRKPQKTNWVMHQYHL 114
                                   47999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.4981133IPR003441NAC domain
SuperFamilySSF1019411.83E-201137IPR003441NAC domain
PfamPF023651.3E-756114IPR003441NAC domain
SuperFamilySSF1019411.83E-2064133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGDIRGHAGL TKDGLSRHYF HRPSKAYTTG TRKRRKIQPP TAATSSSSSP AAQHQQQQQQ  60
QKRSETRWHK TGKTRPVVVA GRQRGCKKIL VLYTNFGKHR KPQKTNWVMH QYHLGEAEEE  120
REGELVVSKI FYQTQPRQCG AAEPSAASSA ATVEMSDQAA AVPVATSSSS AGVAFQGAVG  180
IDEFNFAQFR SSFEEEDGRP ASGLEEVIMG CTSRRATGTE TSGSGSKASA DWQYPSFWPP  240
DNQDHDG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020399939.12e-84NAC domain-containing protein 75 isoform X1
RefseqXP_020399940.11e-84NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F81e-60NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A3L6DFR41e-85A0A3L6DFR4_MAIZE; NAC domain-containing protein 73
STRINGGRMZM2G115721_P011e-104(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3177944
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]