PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03676.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 292aa    MW: 30944.6 Da    PI: 5.4527
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03676.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1543.7e-17119171358
                                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                                     ++kr rr+ +NRe+ArrsR+RK+a +  Le+ v++L++eN +L k+   l++  ++
  Zmw_sc03676.1.g00050.1.sm.mkhc 119 DVKRMRRMVSNRESARRSRKRKQAHLTGLETQVDQLQGENASLFKQ---LTDANQQ 171
                                     579**************************************99955...5555444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.5E-17117181IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.059119171IPR004827Basic-leucine zipper domain
PfamPF001701.2E-14120169IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.81E-13120172No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-13121171No hitNo description
CDDcd147026.79E-21122172No hitNo description
PROSITE patternPS000360124139IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKKCPSELEL EAFIGGVESD AEQKPGRVAQ FGDGVMFQAG GGDLSPFSFA DSVSGKQRKV  60
VLCRLSEVMV LAAASPASAT NLNVKESQTL GGTSGSDSDS DSLFDFEGGL CEQSTNKLDV  120
KRMRRMVSNR ESARRSRKRK QAHLTGLETQ VDQLQGENAS LFKQLTDANQ QFTASVTDNR  180
ILKSNVEALR AKVKLAEDMV ARGAVSCGLG HLGLSPALNP RQACRSPDAL SGLEFPGDDA  240
CFTSLSPTEQ VLNSPLQSID NRMASEVTSC GGGGAGVDVW GWDSHPNGGL SK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139RRSRKRK
2133140RRSRKRKQ
3135140SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.11e-138basic leucine zipper 9-like isoform X1
SwissprotQ6ETX01e-116RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A194YMZ41e-137A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.11e-137(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]