PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03382.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 211aa    MW: 21631.4 Da    PI: 8.9557
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03382.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.26.3e-2086120135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC t++TplWR+gp+g+k+LCnaCG++y+k+++
  Zmw_sc03382.1.g00050.1.am.mk  86 CANCDTSSTPLWRNGPRGPKSLCNACGIRYKKEER 120
                                   ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-1980132IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.5180116IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-1382121No hitNo description
Gene3DG3DSA:3.30.50.103.1E-1784120IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.98E-1285117No hitNo description
PROSITE patternPS00344086111IPR000679Zinc finger, GATA-type
PfamPF003201.0E-1786120IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLQERAPCAC GMRYAGGDCG GRCGGPAFSL MFPVMAGGGQ LGYGGGPVDC TLSLGTPSTR  60
RAEAGAHAKA GGGSAVASCK EPARRCANCD TSSTPLWRNG PRGPKSLCNA CGIRYKKEER  120
RAAAAIAPAP TQCHGSLGPG SYACGAYARQ HQPPPQWGCY GSAAGTTKSA SFAAYGDSAA  180
ADGPRLSWML NGVPSSPAFA VRERHSLFQY Y
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963593.11e-64PREDICTED: GATA transcription factor 20-like
SwissprotQ6QPM29e-27GAT19_ARATH; GATA transcription factor 19
TrEMBLC5YVX71e-62C5YVX7_SORBI; Putative uncharacterized protein Sb09g028850
STRINGSb09g028850.13e-62(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102