PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03372.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 401aa    MW: 43182.3 Da    PI: 6.614
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03372.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.7e-351032351111
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec.....e 74 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ +  +a  + +     e
  Zmw_sc03372.1.g00110.1.sm.mk 103 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEAAAaaE-AaaeatE 182
                                   689**************************************************************44444211.1221123 PP

                           TCP  75 aesssssasnsssg...........................kaaksaakskksqksaasalnla 111
                                   +++++ s+s                                k       s ++++s+as+   +
  Zmw_sc03372.1.g00110.1.sm.mk 183 QGEQVTSTS----YgfsnpggaitavaggsfvqhsvgadgvK-------SLFPSSSTASTTPAH 235
                                   333333333....13445666677777777776433333330.......333333333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-32105231IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615106164IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MASRFKLEED KNQLSEGLDP WSNNPTATTS TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE  60
HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR  120
DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAAAEAAAEA  180
TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSVGADGVK SLFPSSSTAS TTPAHDEYRG  240
SPPDLLSRTT SSQAQELCLT LQHNQHQIFS QVSSNHHGVI SGAGVPGFPE RNQRIPSWHA  300
SENSTGDGRG GGNGDSYMFG MQPQSQVLPQ GEPLQSSGGW ASARTWLDPL TAIQQPSTMT  360
GQIGFSHLIG GAGFMGFLAP ATTHQRLQCE EEQGSEAMRR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-20111165155Putative transcription factor PCF6
5zkt_B7e-20111165155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.10.0transcription factor PCF7
SwissprotQ8LT051e-153PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB940.0A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330