PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03366.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 410aa    MW: 45029.8 Da    PI: 9.4887
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03366.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.74.3e-311893301128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 
                                   lp+G++F+Ptd+ l+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+t
  Zmw_sc03366.1.g00020.1.am.mk 189 LPAGVKFDPTDQVLL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPKRLP-GVSKDGLVRHFFHRPSKAYTT 264
                                   799*********999.99****999985665442...133334666646**********.555666688************ PP

                           NAM  71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   g+rk+r+++       + +W++tgk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y++
  Zmw_sc03366.1.g00020.1.am.mk 265 GTRKRRKVHrddedggETRWHKTGKTRPVLA-NGSVRGYKKILVLYtnYGKQRKPEKTNWVMHQYHV 330
                                   ******7444555555778************.999***********6657999999*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-35182349IPR003441NAC domain
PROSITE profilePS5100531.119189349IPR003441NAC domain
PfamPF023651.5E-13190330IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MQWMARRAAE AKNGARPKTA PPEPHDDANY PTLLLALGDK DSLRRSQSGG SSNRVDRQTR  60
SSAPLSHAGF QPCCRGRPQS RVRYSAHVAL SPNGFDHEPG EPVRGLYLFL RRDRMTWCNG  120
FTDVRAAAET PASVVAATAG KMAAASLAVL VEMCPSCGHR ARTAAHMHES PTLPPDDMLR  180
EMTTTIQDLP AGVKFDPTDQ VLLEHLEGKA RPESRKLHPL VDEFIPTIEG EDGICYTHPK  240
RLPGVSKDGL VRHFFHRPSK AYTTGTRKRR KVHRDDEDGG ETRWHKTGKT RPVLANGSVR  300
GYKKILVLYT NYGKQRKPEK TNWVMHQYHV GADEAERDGE LVVSKVFFQT QPRQCGSATA  360
AAKDPAGAAN NNPVISGGAL AGHTVLREAN VFGVLLQSSD DRDGLALDLD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308424.11e-129uncharacterized protein LOC100275733 isoform 1
SwissprotO494591e-110NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1E5VZX81e-135A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRINGGRMZM2G031200_P011e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]