PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03246.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 440aa    MW: 48804.8 Da    PI: 6.5166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03246.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.82.9e-11275317754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Zmw_sc03246.1.g00030.1.am.mk 275 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 317
                                   79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.51E-5261322No hitNo description
PROSITE profilePS5088815.269268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16272339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15275334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9275317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.80E-5368406No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MLMSSQRAAS WHRIDRITGV PPTQKDPWTM ATRESERRRK KKDTWGTTRG HVGHPLQAFV  60
PMCTDESRFR FRRICGCVGL SSSLASPPLL ALSQEKKPHL LFFILLEEKR GQGKQLSKRG  120
EEMELDEQAF LEEILSLRRD AWECNAVGDF FSPATAAMDC SFQERHQPPP NVSVLPTFTA  180
SYDHQQPPPA PGFDCLSEVY GAAAAFGGPN EGDYGGEMGF LDVIEPKAPL VEGAGLGVCK  240
VEPGLQVDSG GAFSAPAAPV SKKKRVEGMP SKNLMAERRR RKRLNDRLSM LRSVVPKISK  300
MDRTSILGDT IDYMKELLER IKQLQEEIEQ EQHEAPGVLS VFQELNPNEM VARNTPKFEV  360
ERKEGGETRV EIYCAAKPGL LLSTVSTLDT LGLDIQQAVV SCFNDFGMHA SCSEVQREMI  420
SADIIKQELF KNAGYGGGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742RRKKKD
2262282KKRVEGMPSKNLMAERRRRKR
3276283ERRRRKRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142220.11e-171uncharacterized LOC100274388
TrEMBLA0A3L6S1271e-175A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSb10g030470.11e-166(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799