PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03245.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 182aa    MW: 19997.4 Da    PI: 4.5164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03245.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.43e-073970135
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgk 35
                                  + y+ Vr++   grWv+e+r+p   +k+ r++lg+
  Zmw_sc03245.1.g00160.1.sm.mk 39 PVYRCVRRRGPAGRWVCEVREP---NKKSRIWLGT 70
                                  68****************9998...337*****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-43970IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-64079IPR016177DNA-binding domain
PROSITE profilePS5103211.2714078IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-124080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MENNMGDDNQ GAEGEYATVM SAPPKRPAGR TKFRETRHPV YRCVRRRGPA GRWVCEVREP  60
NKKSRIWLGT XXRVDPAALT TPEDIRRAAI DLAEALCQRD AASSSGAAVV DAAAAAAPRT  120
AYQEDETAPY DEAMYGNMEF DHSYYYDGMG GGCDRQNTSW NMDEDDDGTG GCGGSDITLW  180
SY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964394.12e-49dehydration-responsive element-binding protein 1C
SwissprotA2Y8S62e-42DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV32e-42DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLA0A1E5W5R31e-58A0A1E5W5R3_9POAL; Peroxisomal membrane protein 11-5
STRINGOPUNC06G01430.12e-50(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Publications ? help Back to Top
  1. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  2. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  3. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  4. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]