PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03241.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 297aa    MW: 32335.6 Da    PI: 8.6876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03241.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19109159155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + ++GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++aa+++l+g
  Zmw_sc03241.1.g00110.1.am.mk 109 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFATALEAARAYDAAARALYG 159
                                   679****999.**********8...3.35***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.7E-31110173IPR001471AP2/ERF domain
PROSITE profilePS5103220.824110167IPR001471AP2/ERF domain
PRINTSPR003671.8E-9111122IPR001471AP2/ERF domain
PfamPF008478.1E-13111159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-28111167IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-19111167IPR016177DNA-binding domain
CDDcd000181.15E-16111169No hitNo description
PRINTSPR003671.8E-9133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MPGAGISSAF LPPPRQLSIS PSSRLSRLRS SVRPSVLPSV CLSSINTSSC VPRQAKGYSK  60
TRPQVTTRVM EADRSQQQHQ KSTGRKCCPL RRSRKGCMKG KGGPENQQCP FRGVRQRTWG  120
KWVAEIREPN RGARLWLGTF ATALEAARAY DAAARALYGD CARLNLATTA SLVAAGRSMT  180
TSCCSADDSA ASSSVASQLK DAVVLVPGER QCLMTQQDAA AGGMDHTVVR SRTRTDQLLQ  240
DDDDEDFEQF VTRLPKAEDF GLEGFPPEVF DDDATAGICW PDHTCWPAEM VQLVPRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-141071661171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651102.12e-66dehydration-responsive element-binding protein 2C
SwissprotQ84ZA13e-67DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA2YY938e-65A2YY93_ORYSI; Uncharacterized protein
STRINGOS08T0565200-011e-65(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]