PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03199.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 256aa    MW: 27878.5 Da    PI: 9.2044
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03199.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1401.5e-43111461128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrF+Ptd el+ +yL++++ +++l+++  i++++i+ ++P+dL p     +e e yfF++++ ky +g+r+nrat
  Zmw_sc03199.1.g00050.1.sm.mkhc  11 LPPGFRFRPTDVELILHYLRRRAFESPLPAAVDIPDIRILAHDPSDLlP--PGWSEPERYFFTCKEAKYVKGRRANRAT 87 
                                     79***************************9666**************43..3447789********************* PP

                             NAM  79 ksgyWkatgkdkevlsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      +gyWkatgk+k+v ++         +  lvg+k++Lvfy+g+ p+g+ktdWvmheyrl
  Zmw_sc03199.1.g00050.1.sm.mkhc  88 GAGYWKATGKEKPVAVAmpaaapsdhQAVLVGMKRSLVFYRGKPPSGSKTDWVMHEYRL 146
                                     ***************998888887655566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-489178IPR003441NAC domain
PROSITE profilePS5100547.1811178IPR003441NAC domain
PfamPF023654.0E-2512146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MATKDSVKSQ LPPGFRFRPT DVELILHYLR RRAFESPLPA AVDIPDIRIL AHDPSDLLPP  60
GWSEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAMPAAAP SDHQAVLVGM  120
KRSLVFYRGK PPSGSKTDWV MHEYRLAGAG LAPCRRAQAG KPPAHPDEGW VLCRVFRKKG  180
SADAAGAAAP ADAEEEEEED GAAAASGFID FFARADTARR RRASSPMVSS SCLTDSSHEP  240
PQQLCRDQET TSRGSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-351118217169NO APICAL MERISTEM PROTEIN
1ut4_B1e-351118217169NO APICAL MERISTEM PROTEIN
1ut7_A1e-351118217169NO APICAL MERISTEM PROTEIN
1ut7_B1e-351118217169NO APICAL MERISTEM PROTEIN
4dul_A1e-351118217169NAC domain-containing protein 19
4dul_B1e-351118217169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443168.11e-114NAC domain-containing protein 83
TrEMBLA0A3L6RAA21e-119A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGSb08g014060.11e-113(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254