PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03183.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 352aa    MW: 38858.9 Da    PI: 5.4622
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03183.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-19120173356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++ ++q+++Le++F  +++++ e+++++A+ l+L  rqV vWFqNrRa++k
  Zmw_sc03183.1.g00010.1.am.mk 120 KKRRLAADQVRALERCFDADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 173
                                   4557899**********************************************9 PP

2HD-ZIP_I/II124.16.6e-40119211193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+++qv++LE++F++++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal++e ++L+
  Zmw_sc03183.1.g00010.1.am.mk 119 EKKRRLAADQVRALERCFDADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFNSLRARHDALRHECDELR 199
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L++e++e
  Zmw_sc03183.1.g00010.1.am.mk 200 RDKDALAAEIRE 211
                                   *******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.001115175IPR001356Homeobox domain
SuperFamilySSF466899.61E-18116177IPR009057Homeodomain-like
SMARTSM003892.3E-18118179IPR001356Homeobox domain
CDDcd000861.27E-15120176No hitNo description
PfamPF000462.2E-16120173IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-18126174IPR009057Homeodomain-like
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PfamPF021835.2E-14175216IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
PASLSAPGIH LSTEFHVQLL HHTPLPQVGV GSAAALSLHP SLPRPFLSQE LSTMKRPSCR  60
GFSSVASQEA QEQREDSSRS MEQGLDVHAK RDDAVAGAYD EEEEEDEDEL VGGRGGLGEK  120
KRRLAADQVR ALERCFDADN KLDPERKARI ARDLRLHPRQ VAVWFQNRRA RWKTKQIERD  180
FNSLRARHDA LRHECDELRR DKDALAAEIR ELREKVEKQM SIRELREKVE KQMSVKLESA  240
EDRLLPGSVA AATAVHKDGS TDSDSSAVFN EEASPYSGGA AFDHHPSFTG FTSSFLAPSS  300
TLSSSFPFMY SGGPHLDQEA DGFLGAVATA DSFFAAEEQG TGLGSWYGGE GW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167175RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704164.11e-117homeobox-leucine zipper protein HOX8 isoform X1
SwissprotQ338Z75e-84HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBLA0A0A9JEK41e-123A0A0A9JEK4_ARUDO; Uncharacterized protein
STRINGSi040014m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42833170
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]