PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03084.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 526aa    MW: 57137 Da    PI: 4.5145
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03084.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.28.7e-36481392102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+ye+++d+++++++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         we
  Zmw_sc03084.1.g00020.1.sm.mkhc  48 FLMKTYEMVDDPATDDIVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WE 117
                                     9*********************99*****************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     F+++ F +g+k+ll++i+r+k 
  Zmw_sc03084.1.g00020.1.sm.mkhc 118 FANEGFLRGQKHLLKTINRRKP 139
                                     *******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-6244137IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3644137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.1E-3945137IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3148137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MESGVAAAAA AAASATTVTT AVAPPVDPAP AAAHTAVTNG GGAPPPPFLM KTYEMVDDPA  60
TDDIVSWGPG NNSFVVWNTP EFARDLLPKY FKHSNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLRGQKHL LKTINRRKPS LQGNNQQQQP QLQNAPIPAC VEVGKFGLEE EIECLKRDKN  180
VLMQELVRLR QQQQTTDHQL QTLGKRLQGM ESRQQQMMSF LAKAMQSPGF LAQFVQQNEN  240
SRRRIVAVNK KRRLPKQDGG LDSESASLDG QIVKYQPMIN EAAKAMLSKI LNLDASHRFE  300
TMGNSDNFLL ENYMPASQGF DSSSATRNSG VTLAEVPANS GLPYLATSSG LSAICSSSTT  360
PEIQRPVALD NNSSSQVPSM SAAPPVPPVP KPMTPGQSDI SIPEFSDLQD IVTDNIPGGT  420
FGMPGPEGVF PLPEEGDDSI PIETDDILWD DETEKLPGII DSFWEQFLVA SPISGDNGEV  480
DSGVLETPQE NGWNKVENLA NITEQMGLLS SNHNGLLGLR SSLVTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-264614118124Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0D9P90.0A0A0E0D9P9_9ORYZ; Uncharacterized protein
STRINGORGLA03G0383200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151