PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03044.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 338aa    MW: 37270.6 Da    PI: 4.535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03044.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2087137155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +g++GVr++  +g+WvAeIr+p     +   r +lg+f taeeAa+a+++a+++++g
  Zmw_sc03044.1.g00090.1.sm.mkhc  87 CGFRGVRQRT-WGKWVAEIREP-----NqiNRLWLGTFPTAEEAARAYDQAARAMYG 137
                                     79*****999.**********9.....3359***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1487137IPR001471AP2/ERF domain
CDDcd000183.79E-3287145No hitNo description
SMARTSM003805.1E-3588151IPR001471AP2/ERF domain
PROSITE profilePS5103222.16888145IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2188145IPR016177DNA-binding domain
PRINTSPR003672.1E-1089100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3189146IPR001471AP2/ERF domain
PRINTSPR003672.1E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTVDQKAAMP SQSQMQQVQP LQPGRKKRPR RSRDGPNSVT AVIQRWAQMN QELEHNPEAA  60
KKPRKAPAKG SKKGCMKGKG GPENTVCGFR GVRQRTWGKW VAEIREPNQI NRLWLGTFPT  120
AEEAARAYDQ AARAMYGALA RTNFPSPAPT STQAIPAAVE VVQPVSVSCE STMTSNRSDI  180
VSLHKPDSDI STTINSRVEP LETVPHEPKM KSDTLDQNDG GDLGPEAGTS SVADEVFEPL  240
EPIANLPLGD EGVFDIKELL RMMEADPQNK GSSDRTNEGG TEAETEQLFF TDLDSSVLEN  300
MLQSEPELWL MSDDPDMYLT GFQNPDFFEG YDFLEGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15891451572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302434.11e-117dehydration-responsive element-binding protein 2B-like isoform X4
SwissprotQ5W6R42e-80DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A1N7TB580.0A0A1N7TB58_9POAL; Transcription factor DREB2.3
STRINGSi022619m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]