PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03007.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 309aa    MW: 33468.1 Da    PI: 9.6318
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03007.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17151184134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Zmw_sc03007.1.g00030.1.sm.mk 151 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 184
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.23E-13142185No hitNo description
SMARTSM004011.6E-18145197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268149181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14149184IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.86E-14150182No hitNo description
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
PfamPF003202.2E-15151184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGDQDQGLF PAFRIAKDPP ILFPFMIDSP VDQHPGQSYG EQHLRQQFKD HLMMGGSDVI  60
FPRPSPFRPT IQSIGSDMIQ RSKYDPYDIE NYRADGSTGR WAVAPPAKMK IMRKATSEYP  120
EGGAARKPRR KAQAHQDESQ QQQATGVVRV CSDCNTTKTP LWRSGPCGPK SLCNACGIRQ  180
RKARRAMAAA AAAAASNGGA AVTVKVPEQT KRAKERRAEA DRSLPFKKRC KMAAVDQAAT  240
AAKAVPAVAV PIPKEDQDQV LPADSTETAP SLQSKGSTPP PATFHAFPAD EITDAAMLLM  300
TLSCGLVHT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.11e-146putative GATA transcription factor 22
SwissprotQ6YW481e-114CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3GN701e-145A0A2S3GN70_9POAL; Uncharacterized protein
STRINGSi019058m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]