PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02994.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 317aa    MW: 32891.8 Da    PI: 6.5027
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02994.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP30.51.2e-09411113789
                           TCP  37 deLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssasnsssg........... 88 
                                   d+LG+d++sk++ WL+ +a +ai++l+++                              ++s+++  s+g           
  Zmw_sc02994.1.g00090.1.sm.mk  41 DRLGVDQPSKAVAWLIGAAAAAIDALPSLdrfsfalppavadaddagA-----------EVSASE-TSKGsvlslvnapae 109
                                   9****************************9888866554443332220...........222222.222223334333222 PP

                           TCP  89 .k 89 
                                    +
  Zmw_sc02994.1.g00090.1.sm.mk 110 iA 111
                                   20 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-741119IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCSANARILR CFFFLSSWGT GPMGNQKSYP VRNVDGRTTE DRLGVDQPSK AVAWLIGAAA  60
AAIDALPSLD RFSFALPPAV ADADDAGAEV SASETSKGSV LSLVNAPAEI AVPAAAHQTN  120
HAVHAYSGNA GGGGAFAQPL HCAATDDDNK GSVLSLVNAP AEIAVPAAAH QTNHAVHAYS  180
GNAGGGGAFA QPLHCAATDD DKSMRQKGPP TLACYAAQTP SPYITPARNL GTMPQLAFLH  240
EEQQQQPAVV FGLGTLQSNA VAAPLWPPAQ QHPFLLQRFT SADAAGLPFF LGDGAAPVTS  300
SADRRVQFWN FKQERKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.11e-51transcription factor PCF8
TrEMBLA0A3L6T2892e-53A0A3L6T289_PANMI; Transcription factor PCF8
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638