PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02969.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 466aa    MW: 49488.1 Da    PI: 7.7505
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02969.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-19220270256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Zmw_sc02969.1.g00160.1.sm.mk 220 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 270
                                   59******9.**********955...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.15E-31219279No hitNo description
PROSITE profilePS5103222.998220277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32220278IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23220278IPR016177DNA-binding domain
SMARTSM003805.9E-39220283IPR001471AP2/ERF domain
PRINTSPR003678.5E-11221232IPR001471AP2/ERF domain
PfamPF008472.8E-12221270IPR001471AP2/ERF domain
PRINTSPR003678.5E-11243259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDAVDRGGDG GGGRGRGRKW KGKAVSSAGA ERPQLAPVLE DAPAAAFLRP LKKTRSPDQL  60
LRSVSSLSSA PASPDSSSVS NPLSPQATSW PPTRQIFPFA YDPATAAASS EGALAGLMAL  120
PLFQYSGAYQ QQPLPPQQQQ LPVQRQQMIS FGGNDQQQQQ FGAASPLFPP QLVAPEVQQQ  180
MLLRYWSEAL NLSPRGFRGG AVPPALFQHL LRAQQGPPKL YRGVRQRHWG KWVAEIRLPR  240
NRTRLWLGTF DTAEDAAMAY DREAFKLRGE NARLNFPDLF LGKGRVGGSG RTSASAAASC  300
SSSSSSAPPT PDEIRAKQAQ EHHGEEPPAS NSEATPVLPE ADEAKNSKPQ TNSQAQAADQ  360
QSGDGNTAMF QPPVASSGSG VWGPADEAWF SAWGPGSSVW DYDMDNAHGL FLQSRFASES  420
TGMEYASSAQ DVPMTPAPAA GPAMAAASSS LPPPGPPPLP HSPTYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19219277463ATERF1
3gcc_A1e-19219277463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513RGGDGGGGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809849.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2S3GRD60.0A0A2S3GRD6_9POAL; Uncharacterized protein
STRINGSi019997m1e-179(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268