PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02949.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 619aa    MW: 67270.6 Da    PI: 10.0733
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02949.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.8e-40395473178
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Zmw_sc02949.1.g00100.1.am.mk 395 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 473
                                   6******************************98725689*************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-33390458IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291393471IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-36394474IPR004333Transcription factor, SBP-box
PfamPF031101.6E-30396470IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MQSYLPRKPV EVLMSALSNL QKWKSRLVAN ELPELESIIS EMKDKMKARH QRGVGRLILA  60
PLGAVDGSRR ARTGRAGSRS GTVVRLAAPA AALIALGRNT VRSPTCVRRL ANRASPSRID  120
RVLGHEITSH EWDAHRPSWS LPASRRWRTP GAVAPSSAPA MERAAYAAAP DPAVSSSLSS  180
FLQGTHATVP YATLKRLRYW TSPAASELAS TRRERDDSVL AASSPPKKKK RKMMNIPAAG  240
ANACDEFAYV SPGAAPPSLL PIMEQESSIQ REQLGYNLEA NSLALLPPST AAAAHQQATI  300
AAHDILQFYP AAAASSHYLG GGGGNPYSHH FGGSNYQAYY QQAAQASPEY YFPTLVSSAE  360
ENMASFAATQ LGLNLGYRTY FPPRGGYTYG HHPPRCQAEG CKADLSSAKR YHRRHKVCEH  420
HSKAPVVVTA GGLHQRFCQQ CSRFHLLDEF DDAKKSCRKR LADHNRRRRK SKPTDADAAD  480
KKRAQASKAA AGAKDKAGSS SKNNMDIGDG LTTQILGSAL LSKEQDQAMD LGEVVKEAVD  540
PKGKASMQQQ HAHHHGMSNH SFPFPTSSGS CFPQSQAVSS DNTSNIAQVQ EPSLAFHQHH  600
QHSNILQLGQ AMFDMDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-263964701184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KKKKRK
2465482RRRRKSKPTDADAADKKR
3466471RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
RefseqXP_025824698.10.0protein LIGULELESS 1-like
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0A9DKR30.0A0A0A9DKR3_ARUDO; Lg1
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452