PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02924.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YC
Protein Properties Length: 201aa    MW: 22205.3 Da    PI: 4.8559
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02924.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1512.2e-47531552101
                         NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 
                                   l++fwe+q   i+ +tdfkn +lPlarikki++adedv+mi+ ea  ++++acelfilelt rsw ha+en+rrtl+ksdi
  Zmw_sc02924.1.g00080.1.sm.mk  53 LQAFWEEQereIKATTDFKNLNLPLARIKKIMRADEDVRMIAVEALFVFARACELFILELTHRSWAHAQENQRRTLQKSDI 133
                                   89****99988999******************************************************************* PP

                         NF-YC  80 aaavtrtdifdflvdivprdel 101
                                   aaa++rt++fdflvdivprd+ 
  Zmw_sc02924.1.g00080.1.sm.mk 134 AAAIARTEVFDFLVDIVPRDDA 155
                                   *******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.69E-2836146IPR009072Histone-fold
PfamPF008084.7E-2074137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.5E-3575152IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDPSNSSTPP LHPVMGAPVT YPPAAYPPGA PAYDPQFYAP PPAPQAVAAQ QKLQAFWEEQ  60
EREIKATTDF KNLNLPLARI KKIMRADEDV RMIAVEALFV FARACELFIL ELTHRSWAHA  120
QENQRRTLQK SDIAAAIART EVFDFLVDIV PRDDAKDAEA AAAAAAAAIP YPVAAVPSGQ  180
LVSLATDPLA YYYFPRHWDF D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-4660152395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130RRTLQKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445949.12e-67nuclear transcription factor Y subunit C-6
SwissprotQ9XE331e-59NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBLC5YJA94e-66C5YJA9_SORBI; Uncharacterized protein
TrEMBLQ0J0W23e-66Q0J0W2_ORYSJ; Os09g0480700 protein (Fragment)
STRINGOS09T0480700-015e-67(Oryza sativa)
STRINGSb07g028600.16e-67(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]