PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02923.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 436aa    MW: 47204 Da    PI: 9.6033
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02923.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-3478201189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 
                                   aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++          a+++   
  Zmw_sc02923.1.g00010.1.am.mk  78 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 155
                                   689**************************************************************553331...2111211 PP

                           TCP  74 .eaesssssasnsssg.................................k 89 
                                    e+++++ s+s                                      +
  Zmw_sc02923.1.g00010.1.am.mk 156 tEQGEQVTSTS----YgfgsnpggavtgvaggslvqhsagadgvkslfpS 201
                                   23333333333....13444555566666666666543333333333322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3280191IPR005333Transcription factor, TCP
PROSITE profilePS5136931.67881139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST  60
PVDALTAAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR  120
PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTSTSYGFG SNPGGAVTGV  180
AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ  240
SNQHPIFSHV SSNHHGIISG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGETYMFSMQ  300
PRQGLDQIQW QLDFCPYLAR PPSRNTTAVG NGWAAPPLNN FARAEPPCSM RRGPAALPPD  360
YSPHHYRLAL SLRRRIKHRS RVDIKFQNSD RETRGTPRGR AMHTYVGSKQ NSPLCRAPGA  420
GADGGETHAA GSTARP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1986140155Putative transcription factor PCF6
5zkt_B2e-1986140155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972181.11e-161transcription factor PCF7
SwissprotQ8LT051e-122PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A368RB941e-159A0A368RB94_SETIT; Uncharacterized protein
STRINGPavir.Eb03208.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330