PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02777.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 803aa    MW: 84091.2 Da    PI: 8.2427
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02777.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.72.2e-34452547183
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............sss 68 
                                   a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l  +               +
  Zmw_sc02777.1.g00140.1.am.mk 452 ATGRKDRHSKVCTSRGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDKLEVLpawqptnnaaagaALP 532
                                   589**************************************************************7766655554444222 PP

                           TCP  69 saseceaesssssas 83 
                                   ++s++ ++s ++s++
  Zmw_sc02777.1.g00140.1.am.mk 533 PSSSTHPDSAENSDD 547
                                   223332222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-30453527IPR005333Transcription factor, TCP
PROSITE profilePS5136933.126455513IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MRFADCLGVG DSAVGTTHGS LTEEEIGTSM QACIKPRGDR SQLQSRVCPT VLARLDSSVA  60
GAGSRSRDDQ RERGMVGFSG GGPWWLSVAE VDRSIDRGHA AIMGSVNCAA YCTRRCCRRV  120
ACPFGSSDGE GKSSSAGAGA AAAALLVCRA RHRPIAPVLR AVFLPDRIRT PGSILQSVTH  180
QPVNYMSAPT TTFFSLWRSG KRKGPGSVKL CVAASPVSST TPLSARLLLL LLLKWVCDVA  240
IHPIASGLAS PPLHSTALHS PRLGGWMRIA KVVAANQAGD LDPRHHHRVA HGGDGAGGGG  300
GGGGGEADEQ QQQHNHRLLQ FHQEEQDQEP PSAPVFQLQH LQATALSRQR ASSAEYALLA  360
SMGDAGQSHS HSHLHHGGFQ PQLLSFGGVG QQHHHHLHQF TAQAPAGASH SRSRAAGGGG  420
GGEAVPASQS SSRVRSAGGE IVAVQGGHIV RATGRKDRHS KVCTSRGPRD RRVRLSAHTA  480
IQFYDVQDRL GYDRPSKAVD WLIKNAKEAI DKLEVLPAWQ PTNNAAAGAA LPPSSSTHPD  540
SAENSDDQAQ AITVAHAGFD FPIRAEGGGA AGAGGGTAFL PSSLDSDSIA DTIKSFFPVG  600
GGTAGGEASS STAVARHSSA MRFQSYTPDL LSRTGSHSQD LRLSLPDPPM FQHQQQEHDH  660
DRSHGHGGNG STQQALFPGA GSYSFGVWAE QAQSQRMLPW SVPDPGGGSG YLFNVSQQAA  720
ALGGQSQFLF QRGPLQSSTE PSDRGWPESV EADNPMSAIG FAPGIGFSGF RVPARIQGEE  780
EHNGSGNGDK PPPPPAVSSA SHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-20460513154Putative transcription factor PCF6
5zkt_B5e-20460513154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM141e-165PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355