PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02761.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 422aa    MW: 47293.4 Da    PI: 9.0964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02761.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.45e-35431851128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkya 69 
                                     lp+G++F+P+d+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+
  Zmw_sc02761.1.g00130.1.sm.mkhc  43 LPAGVKFDPNDQELI-EHLEAKVREDGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYT 117
                                     799************.99*****9998667544333..3444433445**********.555666799*********** PP

                             NAM  70 tgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                     tg+rk+r+          + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zmw_sc02761.1.g00130.1.sm.mkhc 118 TGTRKRRKiqmecdvhKGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 185
                                     *******85677765444778************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-3937204IPR003441NAC domain
PROSITE profilePS5100533.92843204IPR003441NAC domain
PfamPF023652.1E-1544185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNRPHISSSK LINEKLEEHQ ISTAKHCPNC HHKIDSKPDW VGLPAGVKFD PNDQELIEHL  60
EAKVREDGSR SHPLIDEFIP TIDGEDGICY THPEKLPGVT RDGLSKHFFH RPSKAYTTGT  120
RKRRKIQMEC DVHKGETRWH KTGKTRPVMV NGRQKGCKKI LVLYTNFGKH RKPEKTNWVM  180
HQYHLGDLEE EKEGELVVCK IFYQTQPRQC SWSSDRGAAS AAAVTTVQEQ RRRDSGSGCC  240
SSRDHEVSAT SFPAGGYTVT AAAVDMQQHL KNPADHFSFA PFRKSFDQEV GIGGDQVPSD  300
QLGRPSDQQH HAGGQEQQQP HRPVIATTAV PATAFLISRP SNPVSAIVPP AMQHASVVLD  360
HDQFHVPAIL LHHHDKFQDE KLHVVMQART VQFLTPRRQN GLTRTGHLTT KIIMGSSNKA  420
GK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-114118513140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818124.10.0NAC domain-containing protein 75-like isoform X2
SwissprotQ9M0F81e-128NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1E5VUT40.0A0A1E5VUT4_9POAL; NAC domain-containing protein 73
STRINGGRMZM2G166721_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]