PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02742.1.g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 258aa    MW: 27621.7 Da    PI: 10.2023
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02742.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.38.8e-1899132134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Zmw_sc02742.1.g00030.1.am.mk  99 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 132
                                   *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.18E-1390133No hitNo description
SMARTSM004011.6E-1893145IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-1497132IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.26897129IPR000679Zinc finger, GATA-type
CDDcd002026.45E-1498130No hitNo description
PfamPF003201.7E-1599132IPR000679Zinc finger, GATA-type
PROSITE patternPS00344099124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MMGGSEVIFP RPSPFRPTIQ SIGSDMIQRS KYDPYDIENY RADGSTGRWA VAPPAKMKIM  60
RKATSEYPEG GAARKPRRKA QAHQDESQQQ QATGVVRVCS DCNTTKTPLW RSGPCGPKSL  120
CNACGIRQRK ARRAMAAAAA AAASNGGAAV TVMVPEQTKR AKKEKRAEVD RSLPFKKRCK  180
MAAVDQAATA AKAVPAVAVP IPKEEQDQVL PADSTETAPS LQSKGSTPPP ATFHAFPADE  240
ITDAAMLLMT LSCGLVHT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.11e-120putative GATA transcription factor 22
SwissprotQ6YW489e-87CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3GN701e-119A0A2S3GN70_9POAL; Uncharacterized protein
STRINGSi019058m1e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]