PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02656.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 461aa    MW: 49434 Da    PI: 8.6301
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02656.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-19213263256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p +   r+r +lg+f+tae+Aa a+++ + kl+ge
  Zmw_sc02656.1.g00050.1.sm.mk 213 LYRGVRQRH-WGKWVAEIRLPQN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 263
                                   59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-31212272No hitNo description
SMARTSM003806.1E-39213276IPR001471AP2/ERF domain
PROSITE profilePS5103222.932213270IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23213271IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-32213271IPR001471AP2/ERF domain
PfamPF008473.7E-12214263IPR001471AP2/ERF domain
PRINTSPR003678.3E-11214225IPR001471AP2/ERF domain
PRINTSPR003678.3E-11236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDAADRGGGR GRGREWKGKA VSAAGPERPR LAPVLEDAPA ATFLRPLKKP RSPDQLRRSV  60
SSLSSAPASP DSSSVSNPLS PPATSWPPTR HVFPFAYDPA PAASPDAAAG AGPRVLPLFQ  120
YSSAYQQQPL PPQQQPPVQR QQMISFGGDN QQQQFGAASP LFPPQRVAPE VQKQMLLRYW  180
SEALNLSPRG FRGGAVPPAL FQHLLRAQAP PKLYRGVRQR HWGKWVAEIR LPQNRTRLWL  240
GTFDTAEDAA MAYDREAFKL RGENARLNFP DLFLGKGRVG GSGRTSASAA ASCSSSSSSA  300
PPTPDEIRAK QAQEHHGEEP ASKNSEAKPQ IPEAEQAENS EPQQYSQVQT ADQQSGDCST  360
AMFQPPVTSS GVWGPGDEAW FSAWGPGSSV WDYDMDNAHA GLFLQSRFAS ESTGIDFVSS  420
APDVAMTPAP AAGPAMAAAS SPPPPPPSPP LPHSPTYVWK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20209270163ATERF1
3gcc_A6e-20209270163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809849.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2S3GRD60.0A0A2S3GRD6_9POAL; Uncharacterized protein
STRINGSi019997m1e-177(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268