PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02617.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 301aa    MW: 32599 Da    PI: 11.4382
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02617.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.4e-20179213135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Zmw_sc02617.1.g00130.1.am.mk 179 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 213
                                   ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.167173209IPR000679Zinc finger, GATA-type
SMARTSM004017.3E-19173225IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14176214No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17177213IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.22E-13178210No hitNo description
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
PfamPF003207.5E-18179213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MHKLAQLLRS PVDTAPTRQL EIAVARTSTG PSVRAEEWPF PRTDSCPDIY RDSLLQLQVG  60
SGVAGYPCPS CRQLVLLPSP VVAAQDAAGA GPVRVRYALR RRRLRRTVRW RRGVRVPILA  120
AVSRGGGRAV RLRRRRGWRA VHRRRARGLH AVSRXGGGGA VTSCKEESGS GRGLPSRRCA  180
NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAVA PATRDAGLGS YACGAAYARQ  240
HQQQPPPPQW GCYGSPAGAT SACYGYGDTA GADGPCLSWM LNVMPSSPAF AVQERTLFQY  300
Y
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102