PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02561.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 338aa    MW: 37566.8 Da    PI: 6.0042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02561.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.3e-50321622128
                             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk 79 
                                      pGfrFhPtdeelv++yL++kv+gk+l++ e+ike+diy+++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t 
  Zmw_sc02561.1.g00100.1.am.mkhc  32 LPGFRFHPTDEELVTFYLQRKVDGKRLSI-EIIKEFDIYRHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTG 109
                                     69***************************.89***************445555789*********************** PP

                             NAM  80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     sg+Wkatg d++++s+    +g+ +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  Zmw_sc02561.1.g00100.1.am.mkhc 110 SGFWKATGVDRPIHSAaagrSGACIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 162
                                     ***************987766777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5431189IPR003441NAC domain
PROSITE profilePS5100554.57931189IPR003441NAC domain
PfamPF023652.2E-2533162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGFSKMKSDH GRQGEEEVVL VGDEDEGEDL VLPGFRFHPT DEELVTFYLQ RKVDGKRLSI  60
EIIKEFDIYR HDPWDLPKAS TISMDKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGVDR  120
PIHSAAAGRS GACIGLKKSL VFYRGSAGKG TKTEWMMHEF RLPPRPETAG SSPSTHEAEV  180
WTICRIFRRS LAYKKQPQSM STGNAATVSV PAQPADSSSN TGSLESDTGD DEYMNGLSPL  240
APPNNTNVRN AYDSYQFHGQ WNNGVVPMPP AWSCAETQPS PAMSSAFYHG PHGAHSSSLT  300
TSSPDDECYK GGCSWEDIGR MVMELADDPS VFYDCTFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-473319519171NO APICAL MERISTEM PROTEIN
1ut4_B6e-473319519171NO APICAL MERISTEM PROTEIN
1ut7_A6e-473319519171NO APICAL MERISTEM PROTEIN
1ut7_B6e-473319519171NO APICAL MERISTEM PROTEIN
3swm_A9e-473319522174NAC domain-containing protein 19
3swm_B9e-473319522174NAC domain-containing protein 19
3swm_C9e-473319522174NAC domain-containing protein 19
3swm_D9e-473319522174NAC domain-containing protein 19
3swp_A9e-473319522174NAC domain-containing protein 19
3swp_B9e-473319522174NAC domain-containing protein 19
3swp_C9e-473319522174NAC domain-containing protein 19
3swp_D9e-473319522174NAC domain-containing protein 19
4dul_A6e-473319519171NAC domain-containing protein 19
4dul_B6e-473319519171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.11e-146transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK554e-78NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2S3GVN71e-145A0A2S3GVN7_9POAL; Uncharacterized protein
STRINGSi030477m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]