PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02557.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 155aa    MW: 16488.4 Da    PI: 6.5369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02557.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-161967255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                   y+G+r  +++g+Wv+eIr+p     r  +r++lg+f tae+Aa a++ a+ +l+g
  Zmw_sc02557.1.g00120.1.am.mk 19 FYRGIR--SRSGKWVSEIREP-----RkvRRIWLGTFPTAEMAAVAYDVAASALRG 67
                                  69***6..678*********8.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-181976IPR016177DNA-binding domain
PROSITE profilePS5103220.1921975IPR001471AP2/ERF domain
SMARTSM003802.6E-281981IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-272076IPR001471AP2/ERF domain
PfamPF008471.4E-82067IPR001471AP2/ERF domain
CDDcd000187.38E-282077No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSAHGGGPSS PRSTGKHPFY RGIRSRSGKW VSEIREPRKV RRIWLGTFPT AEMAAVAYDV  60
AASALRGPDA ALNFPDLAAA RPAPAAAAAA AQPEGGSSAP NPYFLDEEAL FETPQFLRNM  120
AAGMMMSPPR ISPNSSDDSP DPSEAGESLW SYRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1416751172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976542.13e-78ethylene-responsive transcription factor ERF025
SwissprotQ9FJ901e-38ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0A9B4N55e-81A0A0A9B4N5_ARUDO; Uncharacterized protein
STRINGSi011086m1e-77(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]