PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02477.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 258aa    MW: 27754.4 Da    PI: 10.5814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02477.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-1358118354
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIksL 54 
                                   r+h+e+Er+RR+riN  +++Lr+llP as         + + ++++Ka+ L ++v+++++L
  Zmw_sc02477.1.g00050.1.am.mk  58 RNHSEAERKRRQRINAHLATLRTLLPAASrvspcafgsARRWRRMDKAALLGEVVRHVREL 118
                                   68*************************999*******6666677**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-1252123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.84355118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-1058119No hitNo description
Gene3DG3DSA:4.10.280.102.3E-1358121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1158118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-961124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-5161230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSAPGLAGYF TPRYEPASKR EARTVAGMVP SQSNEAEATL DGECSAPAPA TTRSGPSRNH  60
SEAERKRRQR INAHLATLRT LLPAASRVSP CAFGSARRWR RMDKAALLGE VVRHVRELRG  120
EADAAAAGAA VAVPGERDEV GVEEGHYCWY AGERAASRHV RAWLCCADRP GLMSELSRAV  180
RSVRARPVRA EIATVGGRTR SVLELNVGGQ HAAADGGSTS SRQTLQAAFR AVLLSREEGM  240
LAADCYKRQR MSAHLAKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957057.12e-93transcription factor bHLH30
RefseqXP_012699568.12e-93transcription factor bHLH30
TrEMBLA0A1E5W6B91e-96A0A1E5W6B9_9POAL; Uncharacterized protein
STRINGSi033077m6e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569