PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02438.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 86aa    MW: 9605.88 Da    PI: 10.5475
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02438.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP53.37.5e-1715454777
                                  SSEEETTT--SS--S-STTTT-------S-- CS
                           SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
                                  +rfh l+efDe+krsCr+rLa+hn+rrrk++
  Zmw_sc02438.1.g00080.1.sm.mk 15 GRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 45
                                  7****************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114113.528144IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.108.0E-61531IPR004333Transcription factor, SBP-box
PfamPF031107.2E-101543IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.42E-131546IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MNLAYLYVLN LYTYGRFHVL TEFDEAKRSC RKRLAEHNRR RRKPAAAADG GTSPAAKKLN  60
SGAIISSYTT DNKSKHLSSG PASIYQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12643KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437398.14e-21squamosa promoter-binding-like protein 10
SwissprotQ0E3F82e-12SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLA0A453T2P02e-20A0A453T2P0_AEGTS; Uncharacterized protein
STRINGBRADI1G31390.14e-21(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4174633