PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02400.1.g00160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 314aa    MW: 34166.1 Da    PI: 4.4124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02400.1.g00160.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-19135186256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+GVr+++ +g++vAeIrdp+ +g   r++lg+++ + +Aa+a+++a+ +++g+
  Zmw_sc02400.1.g00160.1.sm.mk 135 KYRGVRQRP-WGKYVAEIRDPKRRG--SRVWLGTYDVPIDAARAYDRAAFRMRGA 186
                                   8********.**********96554..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-31134194IPR001471AP2/ERF domain
PROSITE profilePS5103223.156135193IPR001471AP2/ERF domain
CDDcd000183.77E-18135194No hitNo description
SuperFamilySSF541711.44E-21135194IPR016177DNA-binding domain
PfamPF008471.7E-13135185IPR001471AP2/ERF domain
SMARTSM003805.6E-35135199IPR001471AP2/ERF domain
PRINTSPR003671.6E-13136147IPR001471AP2/ERF domain
PRINTSPR003671.6E-13175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDFTGDADYF FDLDFIREHL LGSDNGVPMT SWVVSDDSGF PVLHPPAAEP ALQHVPFLPQ  60
QQQQQPEWYM DMAHDYTSAA PAAAAAGEEA CGAQEPVQPV MLMFESDPLS PAISYASPAA  120
TEAAAAPVPI EDFRKYRGVR QRPWGKYVAE IRDPKRRGSR VWLGTYDVPI DAARAYDRAA  180
FRMRGAKAIL NFPNEVGTRG ADLLAASAPA PAKKRRTRQE DPDVEVIAVV SKAAEIVEVP  240
SWTSTPVSSA SSPSSTSTFQ IAEIVASTVT SAASMTASDG AEWAFPETPS SWSWEQSWEE  300
LLRGLPPLSP HPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-25134198468ATERF1
3gcc_A2e-25134198468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446883.13e-79ethylene-responsive transcription factor 6
TrEMBLA0A3B6CB953e-78A0A3B6CB95_WHEAT; Uncharacterized protein
TrEMBLA0A446MLS73e-78A0A446MLS7_TRITD; Uncharacterized protein
STRINGSb06g024360.11e-78(Sorghum bicolor)
STRINGTraes_2AL_E5A9615E2.31e-78(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465